STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fkpAFKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (234 aa)    
Predicted Functional Partners:
htpG
Chaperone protein htpG; Molecular chaperone. Has ATPase activity.
   
 0.973
SLM29842.1
Putative peptidyl-prolyl cis-trans isomerase (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.973
ppiB
Peptidyl-prolyl cis-trans isomerase B (rotamase B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
 0.910
umuC
DNA polymerase V, subunit C; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.798
umuC-2
DNA polymerase V, subunit C; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.798
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.795
SLM33099.1
Putative Beta-ketoacyl synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.725
lysC
Aspartate kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the aspartokinase family.
    
   0.709
yfcA
Aspartokinase; Homologs of previously reported genes of unknown function; putative membrane component;fragment of conserved hypothetical protein; putative inner membrane protein (part 2); Belongs to the aspartokinase family.
    
   0.709
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
 
 
  
 0.681
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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