STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM29851.1Hydrogenase accessory protein HypB. (232 aa)    
Predicted Functional Partners:
hypA
Hydrogenase nickel incorporation protein hypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 0.984
SLM29852.1
Putative hydrogenase nickel incorporation protein hypA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.949
hypD
Protein required for maturation of hydrogenases; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HypD family.
 
  
 0.942
hypC
Hydrogenase expression/formation protein hypC.
 
  
 0.921
hypE
Carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.877
SLM32604.1
Peptidyl-prolyl cis-trans isomerase.
    
 0.847
SLM31371.1
Putative methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.836
SLM30173.1
(NiFe) hydrogenase maturation protein HypF; Belongs to the acylphosphatase family.
 
   
 0.813
SLM29850.1
Hypothetical protein; No homology to any previously reported sequences.
 
     0.750
SLM30180.1
Periplasmic (NiFeSe) hydrogenase small subunit.
 
  
 0.610
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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