STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM30200.1Shikimate/quinate 5-dehydrogenase. (689 aa)    
Predicted Functional Partners:
SLM30199.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
SLM28618.1
Rhodanese domain protein.
   
 
 0.721
SLM29571.1
Putative Rhodanese domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.721
SLM28624.1
Predicted rubrerythrin Rbr.
   
 
 0.716
SLM28641.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
 
 0.716
SLM31747.1
Rubrerythrin.
   
 
 0.716
argA
Amino-acid acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
    
  0.564
SLM29483.1
Putative 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.546
ubiB
UbiB.
       0.501
SLM30203.1
Acyltransferase, WS/DGAT/MGAT.
 
     0.460
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.