STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM30311.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (1193 aa)    
Predicted Functional Partners:
SLM30312.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.976
SLM27557.1
ATP-dependent Lon protease.
 
  
 0.970
SLM29864.1
Peptidase S16 family protein.
 
  
 0.970
SLM29866.1
PglZ domain protein.
 
  
 0.970
SLM30313.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.965
SLM27560.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.963
SLM27561.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.934
SLM29887.1
Restriction enzyme family protein (fragment).
 
  
 0.934
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.874
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.867
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.