STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM30434.1Putative Cathepsin L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (745 aa)    
Predicted Functional Partners:
ppiB
Peptidyl-prolyl cis-trans isomerase B (rotamase B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.732
rpsK
30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.717
SLM29842.1
Putative peptidyl-prolyl cis-trans isomerase (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.680
gltA
GltA4; Belongs to the citrate synthase family.
    
   0.655
gltA-3
Citrate synthase 1; Belongs to the citrate synthase family.
    
   0.655
SLM30436.1
Exported hypothetical protein; No homology to any previously reported sequences.
       0.509
SLM32269.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
 0.477
SLM29931.1
Hypothetical protein; No homology to any previously reported sequences.
   
 0.475
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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