STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM30548.1Transferase hexapeptide repeat containing protein. (227 aa)    
Predicted Functional Partners:
degT-2
Pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  0.921
ecaB
EcaB.
    
 0.883
SLM29327.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.783
degT
Pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  0.706
SLM30719.1
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  0.664
SLM30903.1
Daunorubicin biosynthesis sensory transduction protein dnrJ (fragment).
  
  0.655
rmlC
dTDP-4-deoxyrhamnose-3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
   
   0.626
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
  0.608
SLM30962.1
Putative aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the DegT/DnrJ/EryC1 family.
  
  0.553
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.543
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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