STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM31286.1Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (446 aa)    
Predicted Functional Partners:
SLM31289.1
Type I secretion membrane fusion protein, HlyD family.
 
 0.954
SLM31288.1
Putative ABC transporter related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.927
SLM30356.1
Type I secretion membrane fusion protein, HlyD family.
 
 0.891
SLM29145.1
Hypothetical protein; No homology to any previously reported sequences.
 
 0.890
SLM30152.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.810
SLM28895.1
Putative membrane-fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.778
rndB
RndB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.778
SLM31496.1
Efflux transporter, RND family, MFP subunit (modular protein); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.778
SLM31516.1
Putative Efflux transporter, RND family, MFP subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.778
SLM31604.1
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.778
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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