STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFR_06420Allantoate amidohydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases. (391 aa)    
Predicted Functional Partners:
AFR_06415
N-formimino-L-glutamate deiminase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
  
 0.981
AFR_27555
Phenylhydantoinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
 
 0.949
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.916
AFR_27550
Putative carbon-nitrogen hydrolase; COG0388 Predicted amidohydrolase.
 
  
 0.916
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
 
     0.889
AFR_06405
COG2986 Histidine ammonia-lyase.
     
 0.871
AFR_06430
COG1737 Transcriptional regulators.
 
     0.844
AFR_38975
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     
 0.800
AFR_39505
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     
 0.800
AFR_31505
Putative allantoinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
 
 0.759
Your Current Organism:
Actinoplanes friuliensis
NCBI taxonomy Id: 1246995
Other names: A. friuliensis DSM 7358, Actinoplanes friuliensis DSM 7358, Actinoplanes friuliensis HAG 010964
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