STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHG62820.1Putative haloacid dehalogenase (HAD)-like hydrolase. (212 aa)    
Predicted Functional Partners:
cbxS
Ribulose bisphosphate carboxylase small chain.
    
 0.913
AHG62918.1
Ribulose bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
    
 0.908
cbbL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
    
 0.908
glcF
Glycolate oxidase iron-sulfur subunit.
    
 0.908
glcE
Glycolate oxidase FAD-binding subunit.
    
 0.907
glcD
Glycolate oxidase subunit GlcD.
    
 0.907
AHG64816.1
Putative NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase.
    
 0.906
hprA
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.904
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
    0.766
AHG62640.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 0.436
Your Current Organism:
Advenella mimigardefordensis
NCBI taxonomy Id: 1247726
Other names: A. mimigardefordensis DPN7, Advenella mimigardefordensis DPN7
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.