STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuDgamma-Glu-GABA hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (250 aa)    
Predicted Functional Partners:
SIT38400.1
Glutamate--putrescine ligase; Belongs to the glutamine synthetase family.
 
 
 0.931
SIT38401.1
Uncharacterized aminotransferase y4uB; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
  0.849
gltB
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.792
SIT49440.1
Glycine/D-amino acid oxidase, deaminating.
 
  
 0.666
SIT43531.1
Glutamine synthetase catalytic region.
 
 
 0.621
gabT
4-aminobutyrate aminotransferase, PLP-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.607
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.582
SIT36453.1
Putative FAD dependent oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.564
SIT40011.1
Aminotransferase class-III (fragment).
  
 
 0.552
SIT39816.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
  0.550
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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