STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT39523.1Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (283 aa)    
Predicted Functional Partners:
SIT35512.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.661
yusQ
Putative tautomerase YusQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.652
SIT43232.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.638
SIT35599.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.610
ydcI
Uncharacterized HTH-type transcriptional regulator YdcI; Belongs to the LysR transcriptional regulatory family.
  
     0.586
SIT41119.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.582
SIT41299.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.578
SIT37552.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.554
SIT37948.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.545
SIT46411.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.542
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.