STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT39704.1Extracellular solute-binding protein family 1. (364 aa)    
Predicted Functional Partners:
SIT39702.1
ABC spermidine/putrescine transporter, inner membrane subunit.
 
 
 0.976
SIT39701.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.955
potI
Putrescine transporter subunit: membrane component of ABC superfamily; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.859
SIT37331.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.855
SIT45791.1
ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.825
cysA-4
Sulfate/thiosulfate import ATP-binding protein CysA 2; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.822
SIT45043.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.820
potH
Putrescine transporter subunit: membrane component of ABC superfamily; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.815
SIT43243.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.815
SIT39795.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.813
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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