STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT43846.14-oxalomesaconate hydratase. (341 aa)    
Predicted Functional Partners:
proA
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
  
 0.947
SIT43850.1
Protocatechuate 4,5-dioxygenase beta chain.
 
  
 0.867
SIT43848.1
Amidohydrolase.
 
  
 0.861
ligB
Protocatechuate 4,5-dioxygenase beta chain.
 
  
 0.818
SIT43810.1
Amidohydrolase 2.
 
  
 0.760
SIT42302.1
Putative Phosphogluconate dehydrogenase, NAD-binding,-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.738
SIT43845.1
4,5-dihydroxyphthalate decarboxylase.
 
     0.713
SIT43855.1
Phosphate ABC transporter substrate-binding protein.
 
     0.655
prpF
AcnD-accessory protein (DUF453); Function of strongly homologous gene; factor.
    
 0.646
SIT44916.1
Glyoxalase/bleomycin resistance protein/dioxygenase (fragment).
    
 0.607
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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