STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT46017.1Major facilitator superfamily (MFS) multidrug efflux pump. (518 aa)    
Predicted Functional Partners:
SIT44579.1
Multidrug resistance efflux pump.
 
  0.867
emrA-3
Multidrug efflux system; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  0.852
SIT40077.1
Membrane fusion component of tripartite multidrug resistance system.
 
  0.846
emrA
Multidrug efflux system; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  0.841
emrA-2
Multidrug efflux system; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  0.839
SIT46016.1
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.825
SIT41830.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
     0.764
SIT41259.1
Arabinose efflux permease family protein.
  
     0.752
SIT46018.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the MtfA family.
       0.742
SIT41630.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
     0.721
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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