STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proV-2Glycine betaine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (392 aa)    
Predicted Functional Partners:
gbuB
Glycine betaine/carnitine transport permease protein GbuB.
 0.997
SIT46337.1
Choline ABC transporter, periplasmic binding protein.
 
 0.993
SIT41310.1
L-proline glycine betaine ABC transport system permease protein ProW.
 0.990
SIT37540.1
ABC proline/glycine betaine transporter, inner membrane subunit.
 0.989
proW
Glycine betaine/L-proline transport system permease protein ProW.
 0.989
SIT46409.1
Substrate-binding region of ABC-type glycine betaine transport system.
 
 0.987
SIT46414.1
Choline ABC transporter, periplasmic binding protein.
 
 0.981
SIT41309.1
Substrate-binding region of ABC-type glycine betaine transport system.
 
 0.978
SIT38960.1
Glycine betaine-binding protein.
 
 0.976
SIT37542.1
Histidine ABC transporter, histidine-binding protein.
 
 0.970
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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