STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbJPutative stress response protein; Contig: BN2475_Contig_077; Belongs to the UPF0337 (CsbD) family. (68 aa)    
Predicted Functional Partners:
SIT41234.1
Phospholipid binding protein.
 
  
 0.932
ytjA-2
Hypothetical protein; No homology to any previously reported sequences.
 
    0.908
SIT38915.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.846
SIT39991.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.844
ytjA
Hypothetical protein; No homology to any previously reported sequences.
 
    0.817
SIT38912.1
Ferritin Dps family protein.
  
    0.791
SIT39009.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.738
SIT40813.1
Glycosyl transferase family 2.
   
    0.730
SIT42553.1
Glycosyl transferase family 2.
   
    0.730
SIT39411.1
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.676
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.