STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garDD-galactarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (529 aa)    
Predicted Functional Partners:
SIT45836.1
SAF domain-containing protein.
 
  
  0.978
gudD
(D)-glucarate dehydratase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.977
SIT47827.1
5-dehydro-4-deoxyglucarate dehydratase (KDGDH); Function of strongly homologous gene; enzyme; Belongs to the DapA family.
 
  
 0.968
kdgK
2-dehydro-3-deoxygluconokinase.
 
  
 0.940
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.933
SIT45835.1
Altronate dehydratase.
  
  
 
0.932
gudD-2
Putative glucarate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.931
SIT45963.1
PfkB domain protein.
 
  
 0.931
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
  0.926
garL
alpha-dehydro-beta-deoxy-D-glucarate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.805
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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