STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT47878.1Transcriptional regulator, XRE family. (84 aa)    
Predicted Functional Partners:
hipA
Regulator with hipB; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
 
 0.991
SIT47879.1
Hypothetical protein; No homology to any previously reported sequences.
       0.608
SIT35488.1
HipA-like C-terminal domain protein.
  
 
 0.524
argA
Amino-acid acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
    
  0.495
nadE-2
Putative glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.474
SIT35307.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.447
SIT47880.1
FAD dependent oxidoreductase.
       0.437
SIT43756.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
   
 
  0.415
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.410
ndk
Nucleoside diphosphate kinase (NDK) (NDP kinase); Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.403
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.