STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733125_00148Unannotated protein. (453 aa)    
Predicted Functional Partners:
GCA_000733125_01616
Unannotated protein.
  
  
 0.937
GCA_000733125_00017
Unannotated protein.
   
    0.883
GCA_000733125_00038
Unannotated protein.
   
  
 0.805
GCA_000733125_00099
Unannotated protein.
  
  
 0.732
GCA_000733125_00300
Unannotated protein.
   
    0.628
GCA_000733125_00916
Unannotated protein.
  
  
 0.600
GCA_000733125_00149
Unannotated protein.
       0.588
GCA_000733125_00146
Unannotated protein.
       0.559
GCA_000733125_00147
Unannotated protein.
       0.559
GCA_000733125_00050
Unannotated protein.
  
   
 0.527
Your Current Organism:
Parvularcula oceani
NCBI taxonomy Id: 1247963
Other names: CGMCC 1.12400, LMG 27362, LMG:27362, P. oceani, Parvularcula oceanus, Parvularcula sp. JLT2013, strain JLT2013
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.