STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV97648.1Hypothetical protein; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (355 aa)    
Predicted Functional Partners:
AFV98618.1
COG1140 Nitrate reductase beta subunit.
    
   0.726
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.555
AFV97649.1
Hypothetical protein.
       0.542
AFV98211.1
COG0223 Methionyl-tRNA formyltransferase.
  
  
 0.538
AFV97846.1
COG0539 Ribosomal protein S1.
   
    0.472
AFV98603.1
AMP-dependent synthetase/ligase; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
     
 0.462
AFV96772.1
Riboflavin biosynthesis protein ribd; COG0117 Pyrimidine deaminase.
     
 0.437
ribB
Hypothetical protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
  
 0.426
AFV97650.1
Hypothetical protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.417
AFV97651.1
COG1741 Pirin-related protein; Belongs to the pirin family.
     
 0.405
Your Current Organism:
Sulfuricurvum sp. RIFRC1
NCBI taxonomy Id: 1249480
Other names: C. Sulfuricurvum sp. RIFRC-1, Candidatus Sulfuricurvum sp. RIFRC-1, uncultured Sulfuricurvum sp. RIFRC-1
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