STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOQ90469.1Penicillin-binding protein, 1A family. (850 aa)    
Predicted Functional Partners:
EOQ89769.1
Transglycosylase.
  
  
 
0.939
EOQ87881.1
Penicillin-binding protein, 1A family.
  
  
 
0.936
EOQ90704.1
Peptidase, M23 family.
 
   
 0.860
EOQ90566.1
Zinc dependent phospholipase C.
     
 0.800
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
  
 0.766
EOQ90603.1
Polymer-forming cytoskeletal family protein.
     
 0.751
pbpC
Penicillin-binding protein 1C.
  
  
0.738
EOQ88166.1
Cell cycle protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family.
  
  
 0.733
EOQ89461.1
Transglycosylase.
 
 
0.675
EOQ90599.1
Putative diaminopimelate decarboxylase.
       0.674
Your Current Organism:
Leptospira yanagawae
NCBI taxonomy Id: 1249483
Other names: L. yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523, Leptospira genomosp. 5 str. ATCC 700523, Leptospira yanagawae serovar Saopaulo str. ATCC 700523 = Sao Paulo, Leptospira yanagawae serovar Saopaulo str. Sao Paulo, Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523
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