STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D779_0302Hypothetical protein. (291 aa)    
Predicted Functional Partners:
D779_0506
Putative peptide synthetase protein.
  
 
 0.982
D779_2298
NADH dehydrogenase.
     
 0.834
D779_3687
Long-chain-fatty-acid--CoA ligase.
  
  
 0.808
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
 
  0.793
D779_2161
Rhodanese domain protein.
     
 0.769
D779_2678
Hypothetical protein.
  
 
 0.732
D779_1179
ABC transporter substrate-binding protein.
  
 
 0.731
D779_3683
ABC-type nitrate/sulfonate/bicarbonate transport system protein.
  
 
 0.731
D779_3911
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 
 0.701
D779_0800
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.674
Your Current Organism:
Imhoffiella purpurea
NCBI taxonomy Id: 1249627
Other names: I. purpurea, Imhoffiella purpurea Nupur et al. 2017, JCM 18851, KCTC 15575, MTCC 12304, Thiorhodococcus sp. AK35, strain AK35
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