STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D779_0311Putative ABC transporter, ATP-binding protein YrbF. (274 aa)    
Predicted Functional Partners:
D779_0309
Putative ABC transporter, periplasmic component YrbD.
 
 0.999
D779_0310
Putative ABC transporter, permease component YrbE.
 0.999
D779_0341
Putative ABC transport system permease protein.
 0.998
D779_0003
Hypothetical protein.
 
 0.996
D779_0308
Putative ABC transporter, auxiliary component YrbC.
 
 
 0.986
D779_0005
ABC-type transport system involved in resistance to organic solvents, periplasmic component.
  
 0.983
D779_0307
Hypothetical protein.
  
 0.968
D779_0343
Putative ABC transport system periplasmic substrate-binding protein.
  
 0.963
D779_0593
Anti-sigma F factor antagonist (spoIIAA-2).
   
  0.904
D779_0637
Anti-sigma F factor antagonist (spoIIAA-2); Belongs to the anti-sigma-factor antagonist family.
   
  0.904
Your Current Organism:
Imhoffiella purpurea
NCBI taxonomy Id: 1249627
Other names: I. purpurea, Imhoffiella purpurea Nupur et al. 2017, JCM 18851, KCTC 15575, MTCC 12304, Thiorhodococcus sp. AK35, strain AK35
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.