STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D779_1176Type III secretion cytoplasmic protein (YscL). (219 aa)    
Predicted Functional Partners:
D779_1174
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
 
  
 0.996
D779_1151
Flagellum-specific ATP synthase FliI.
 
 
 0.988
D779_1156
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV).
 
  
 0.975
D779_1145
Type III secretion inner membrane protein.
 
  
 0.969
D779_1144
Type III secretion inner membrane protein.
 
  
 0.957
D779_2483
Flagellum-specific ATP synthase FliI.
 
 
 0.957
D779_2522
Flagellar protein FlgJ.
  
  
 0.948
D779_1143
Type III secretion inner membrane protein.
 
  
 0.944
D779_1148
Type III secretion inner membrane protein.
  
 
 0.941
D779_1172
Hypothetical protein.
  
    0.937
Your Current Organism:
Imhoffiella purpurea
NCBI taxonomy Id: 1249627
Other names: I. purpurea, Imhoffiella purpurea Nupur et al. 2017, JCM 18851, KCTC 15575, MTCC 12304, Thiorhodococcus sp. AK35, strain AK35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.