STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D779_2221Hypothetical protein. (966 aa)    
Predicted Functional Partners:
D779_2243
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.882
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.858
D779_2467
Hypothetical protein.
  
 
 
 0.846
D779_0849
Type IV pilus biogenesis protein PilN.
  
  
 0.845
D779_0647
Signal transduction histidine kinase CheA.
  
  
 0.821
D779_0015
Hypothetical protein.
    
 
 0.814
D779_0725
Hypothetical protein.
    
 
 0.814
D779_0738
Hypothetical protein.
    
 
 0.814
D779_3142
Hypothetical protein.
    
 
 0.814
D779_3912
Hypothetical protein.
    
 
 0.814
Your Current Organism:
Imhoffiella purpurea
NCBI taxonomy Id: 1249627
Other names: I. purpurea, Imhoffiella purpurea Nupur et al. 2017, JCM 18851, KCTC 15575, MTCC 12304, Thiorhodococcus sp. AK35, strain AK35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.