STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR95601.1RNA polymerase sigma-70 factor, ECF subfamily. (192 aa)    
Predicted Functional Partners:
SDR95503.1
Hypothetical protein.
 
     0.852
SDS05609.1
RNA polymerase, sigma subunit, SigZ; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.715
SDR95546.1
Hypothetical protein.
       0.648
SDS10216.1
Anti-sigma-K factor rskA.
  
 
 0.537
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.520
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
SDR95468.1
CotH protein.
 
     0.504
SDR95642.1
16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.499
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.457
SDR82589.1
RNA polymerase Rpb6.
    
 
 0.456
Your Current Organism:
Winogradskyella sp. RHA55
NCBI taxonomy Id: 1249933
Other names: W. sp. RHA_55, Winogradskyella sp. RHA_55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.