STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGL63360.1cAMP-binding protein. (189 aa)    
Predicted Functional Partners:
KGL64384.1
Glutamate synthase (NADPH) large chain.
    
 0.718
KGL61908.1
Pyruvate-flavodoxin oxidoreductase.
    
 0.679
KGL63362.1
ATP-dependent RNA helicase YqfR.
 
 
   0.594
KGL63363.1
Short chain dehydrogenase.
   
  0.566
KGL63361.1
DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
   
   0.538
KGL63987.1
Ras family protein.
  
 
  0.519
KGL62188.1
One component system signal transduction histidine kinase / response regulator hybrid.
   
 0.492
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.482
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.477
KGL63077.1
RNA polymerase Rpb6.
    
   0.440
Your Current Organism:
Polaribacter sp. Hel185
NCBI taxonomy Id: 1250005
Other names: P. sp. Hel1_85, Polaribacter sp. Hel1_85, Polaribacter sp. Hel_I_85
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