STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED12962.1Aspartate/methionine/tyrosine aminotransferase. (380 aa)    
Predicted Functional Partners:
SED12992.1
Prephenate dehydrogenase.
 
  
 0.984
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.948
SED12929.1
Prephenate dehydratase.
 
  0.947
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.942
SEB42579.1
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
    
 0.930
SED13023.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
  
 
  0.929
SED06894.1
Homoserine O-acetyltransferase.
  
 0.861
SEB68733.1
Glutamate synthase (NADH) large subunit.
    
 0.835
SEB35129.1
Aspartate kinase; Belongs to the aspartokinase family.
 
 0.791
SEC78579.1
Aspartate kinase.
 
 0.784
Your Current Organism:
Tenacibaculum sp. MAR2009124
NCBI taxonomy Id: 1250059
Other names: T. sp. MAR_2009_124, Tenacibaculum sp. MAR_2009_124
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