STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR99592.1TonB-linked outer membrane protein, SusC/RagA family. (990 aa)    
Predicted Functional Partners:
SDR99564.1
SusD family protein.
 
   0.972
SDS03358.1
Starch-binding associating with outer membrane.
  
 
   0.804
SDR87309.1
Starch-binding associating with outer membrane.
  
 
   0.768
SDR99531.1
Methyltransferase domain-containing protein.
 
     0.752
SDS23571.1
Starch-binding associating with outer membrane.
  
     0.737
SDS44857.1
SusD family protein.
  
 
   0.686
SDR83494.1
Starch-binding associating with outer membrane.
 
 
   0.668
SDR73845.1
Starch-binding associating with outer membrane.
  
 
   0.664
SDR87691.1
Starch-binding associating with outer membrane.
  
 
   0.651
SDR91395.1
Starch-binding associating with outer membrane.
  
 
   0.647
Your Current Organism:
Gramella sp. MAR2010102
NCBI taxonomy Id: 1250231
Other names: G. sp. MAR_2010_102, Gramella sp. MAR_2010_102
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