STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB43119.1Fumarylacetoacetate hydrolase. (430 aa)    
Predicted Functional Partners:
SDB64006.1
Homogentisate 1,2-dioxygenase.
 
 
 0.926
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.867
SDB60615.1
Succinate dehydrogenase subunit A.
  
 
  0.864
SDB60633.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
  0.855
SDB60604.1
Succinate dehydrogenase / fumarate reductase cytochrome b subunit.
    
  0.854
SDB64024.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.847
SDB35016.1
FAD/FMN-containing dehydrogenase.
  
 
  0.635
SDB43134.1
Hypothetical protein.
    
  0.602
SDB55274.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
  
 0.523
leuC
3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
 
  0.504
Your Current Organism:
Flavobacteriaceae bacterium MAR2010188
NCBI taxonomy Id: 1250295
Other names: F. bacterium MAR_2010_188, Flavobacteriaceae bacterium MAR_2010_188
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