STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ51697.1Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies). (170 aa)    
Predicted Functional Partners:
APZ51330.1
Alkaline phosphatase.
 
   0.785
APZ52404.1
Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
     0.775
APZ51300.1
Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
     0.733
APZ53063.1
PFAM: HlyD family secretion protein; Biotin-lipoyl like; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.725
APZ53062.1
ATP-binding cassette, subfamily C; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: type I secretion system ABC transporter, PrtD family.
 
 
 0.691
APZ54283.1
Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
     0.688
APZ53308.1
Membrane fusion protein, adhesin transport system; PFAM: HlyD family secretion protein; Biotin-lipoyl like; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.615
APZ53307.1
ATP-binding cassette, subfamily C, LapB; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: type I secretion system ATPase, LssB family.
 
  
 0.517
APZ51698.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
       0.437
APZ51696.1
ATP-dependent DNA helicase, Rep family; PFAM: UvrD-like helicase C-terminal domain; UvrD/REP helicase N-terminal domain.
       0.416
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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