STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ52907.1Xaa-Pro dipeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain. (397 aa)    
Predicted Functional Partners:
APZ52910.1
Proline iminopeptidase; PFAM: alpha/beta hydrolase fold.
 
 
 
 0.836
APZ52906.1
Oligopeptide transport system ATP-binding protein; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
  
 0.820
APZ52908.1
PFAM: Binding-protein-dependent transport system inner membrane component; N-terminal TM domain of oligopeptide transport permease C.
  
    0.789
APZ52911.1
Putative flavoprotein involved in K+ transport; PFAM: L-lysine 6-monooxygenase (NADPH-requiring).
  
  
 0.780
APZ52909.1
PFAM: Binding-protein-dependent transport system inner membrane component.
     
 0.776
APZ52905.1
Peptide/nickel transport system ATP-binding protein; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
       0.773
APZ52912.1
Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
       0.768
APZ52904.1
Peptide/nickel transport system substrate-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
    0.614
APZ52902.1
PFAM: AsnC family; AsnC-type helix-turn-helix domain.
   
   0.515
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.511
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.