STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ52988.1Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (377 aa)    
Predicted Functional Partners:
APZ52987.1
Hypothetical protein.
       0.572
APZ54114.1
Flagellar motor rotation protein MotB.
  
     0.488
APZ52509.1
PFAM: Acyl transferase domain; Polyketide synthase dehydratase; Ketoacyl-synthetase C-terminal extension; Beta-ketoacyl synthase, C-terminal domain; Phosphopantetheine attachment site; Thioesterase domain; KR domain; Beta-ketoacyl synthase, N-terminal domain.
 
  
 0.466
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.