STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53017.1Hypothetical protein. (403 aa)    
Predicted Functional Partners:
APZ53298.1
Identified by similarity to SP:Q9CKX3.
 
     0.622
APZ53016.1
Lipoprotein, putative.
       0.536
APZ55117.1
Hypothetical protein.
  
     0.503
APZ52820.1
Hypothetical protein.
  
     0.464
APZ52373.1
PFAM: Rhodanese-like domain.
  
     0.444
APZ53018.1
PFAM: predicted DUF308 protein.
       0.432
APZ53300.1
Hypothetical protein.
 
     0.418
APZ52749.1
Hint domain-containing protein; PFAM: Hint domain.
  
     0.414
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.