STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53296.1PFAM: Membrane bound YbgT-like protein; TIGRFAM: cyd operon protein YbgT. (45 aa)    
Predicted Functional Partners:
APZ53294.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein; PFAM: Cytochrome bd terminal oxidase subunit I.
 
 
 0.983
APZ53295.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein; PFAM: Cytochrome bd terminal oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB).
 
 
 0.983
APZ53292.1
ATP-binding cassette, subfamily C, CydD; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: thiol reductant ABC exporter, CydD subunit.
 
  
 0.911
APZ53293.1
ATP-binding cassette, subfamily C, CydC; PFAM: ABC transporter.
 
  
 0.911
APZ53298.1
Identified by similarity to SP:Q9CKX3.
 
     0.753
APZ53300.1
Hypothetical protein.
 
     0.613
APZ53297.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
     0.551
APZ53481.1
PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit.
     
  0.499
APZ53483.1
Succinate dehydrogenase subunit A; PFAM: FAD binding domain; Fumarate reductase flavoprotein C-term; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.499
APZ53488.1
Succinate dehydrogenase subunit B; PFAM: 2Fe-2S iron-sulfur cluster binding domain; 4Fe-4S dicluster domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.499
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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