STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53360.1Protein-disulfide isomerase; PFAM: Thioredoxin. (202 aa)    
Predicted Functional Partners:
APZ53359.1
Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.
 
    0.837
APZ53357.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Two-component sensor kinase N-terminal.
 
     0.787
APZ51119.1
Suppressor for copper-sensitivity B; PFAM: Thioredoxin-like; Disulphide bond corrector protein DsbC; Cytochrome C biogenesis protein transmembrane region.
 
 
 0.703
APZ51773.1
PFAM: Thioredoxin.
  
   
 0.683
APZ53358.1
Two-component system, OmpR family, response regulator QseB; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
 
    0.653
APZ53361.1
Ykud domain-containing protein; PFAM: L,D-transpeptidase catalytic domain.
  
    0.540
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.472
APZ54846.1
PFAM: Disulfide bond formation protein DsbB.
  
 
 0.457
bamD
Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.424
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.