STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53646.1Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (294 aa)    
Predicted Functional Partners:
APZ53645.1
Regulator of nitric oxide reductase transcription; PFAM: 4Fe-4S binding domain.
  
 0.991
APZ53651.1
Hypothetical protein.
 
     0.716
APZ53647.1
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
    0.674
APZ53648.1
Cytochrome c-550 PedF; PFAM: Cytochrome C oxidase, cbb3-type, subunit III; TIGRFAM: cytochrome c-550 PedF.
 
    0.658
APZ53644.1
Restriction system protein; PFAM: Mrr N-terminal domain; Restriction endonuclease.
       0.586
APZ51815.1
Cobalt/nickel transport protein; PFAM: predicted DUF4198 protein.
  
    0.504
APZ53084.1
Dihydropyrimidine dehydrogenase (NADP+); PFAM: Dihydroorotate dehydrogenase; 4Fe-4S dicluster domain; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein.
  
  
 0.499
APZ53657.1
Alcohol dehydrogenase (cytochrome c); PFAM: PQQ-like domain; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.
 
     0.488
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.487
APZ54012.1
PFAM: Di-haem oxidoreductase, putative peroxidase.
   
    0.482
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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