STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53648.1Cytochrome c-550 PedF; PFAM: Cytochrome C oxidase, cbb3-type, subunit III; TIGRFAM: cytochrome c-550 PedF. (227 aa)    
Predicted Functional Partners:
APZ53647.1
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
  
 0.963
APZ53650.1
TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; 40-residue YVTN family beta-propeller repeat.
 
 
 0.934
APZ54719.1
Hypothetical protein; PFAM: FIST C domain; FIST N domain.
 
    0.898
APZ53649.1
PFAM: Periplasmic binding protein; TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system.
 
     0.892
APZ53657.1
Alcohol dehydrogenase (cytochrome c); PFAM: PQQ-like domain; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.
 
  
 0.891
APZ53651.1
Hypothetical protein.
 
     0.878
APZ51739.1
Sulfur dehydrogenase subunit SoxD; PFAM: Cytochrome c; Cytochrome C oxidase, cbb3-type, subunit III.
  
 
 0.870
APZ53645.1
Regulator of nitric oxide reductase transcription; PFAM: 4Fe-4S binding domain.
 
  
 0.869
APZ51911.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.802
APZ53656.1
PFAM: Cytochrome c.
 
 
 0.794
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.