STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53947.1TRAP-type C4-dicarboxylate transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein, family 7. (333 aa)    
Predicted Functional Partners:
APZ53945.1
TRAP transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.949
APZ53944.1
PFAM: Demethylmenaquinone methyltransferase.
 
     0.885
APZ53597.1
TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.818
APZ53946.1
TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
  
  
 0.810
APZ53443.1
TRAP transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.804
APZ53598.1
PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.804
APZ51824.1
TRAP transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.803
APZ53211.1
TRAP transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.802
APZ54282.1
PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.790
APZ52444.1
TRAP transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctM component; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.781
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.