STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ53954.1Peptide/nickel transport system substrate-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle. (509 aa)    
Predicted Functional Partners:
APZ53952.1
PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the binding-protein-dependent transport system permease family.
 0.995
APZ53951.1
Peptide/nickel transport system ATP-binding protein; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
 0.981
APZ53962.1
Peptide/nickel transport system ATP-binding protein; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
 0.940
APZ53953.1
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.936
APZ52191.1
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.782
APZ52192.1
PFAM: Binding-protein-dependent transport system inner membrane component; N-terminal TM domain of oligopeptide transport permease C.
   0.761
APZ53963.1
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.743
APZ52909.1
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.731
APZ51469.1
PFAM: Binding-protein-dependent transport system inner membrane component.
   0.726
APZ53948.1
PFAM: Creatinine amidohydrolase.
 
     0.702
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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