STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ54013.1Hypothetical protein; PFAM: Imelysin. (322 aa)    
Predicted Functional Partners:
APZ54012.1
PFAM: Di-haem oxidoreductase, putative peroxidase.
 
  
 0.984
APZ54014.1
PFAM: predicted DUF1513 protein.
 
  
 0.982
APZ54009.1
Putative iron-regulated protein; PFAM: Imelysin.
 
  
 0.969
APZ54010.1
(2Fe-2S) protein; PFAM: BFD-like [2Fe-2S] binding domain.
 
    0.775
APZ54011.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
     0.726
APZ54008.1
PFAM: Hemin uptake protein hemP.
       0.494
APZ54686.1
PAS domain-containing protein; PFAM: PAS domain.
  
     0.492
APZ54015.1
Hypothetical protein.
       0.445
APZ52445.1
TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
  
     0.400
APZ52647.1
Flagellar hook-associated protein 3 FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.400
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.