STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ54150.1Chromosome partitioning protein, ParB family; PFAM: ParB-like nuclease domain. (284 aa)    
Predicted Functional Partners:
APZ54149.1
Mu DNA-binding domain-containing protein; PFAM: Mu transposase, C-terminal; Mu DNA binding, I gamma subdomain; Bacteriophage Mu transposase; Mu DNA-binding domain.
 
     0.950
APZ54143.1
PFAM: predicted DUF3164 protein.
 
     0.899
APZ54148.1
Hypothetical protein; PFAM: AAA domain.
 
     0.889
APZ54151.1
Hypothetical protein.
       0.773
APZ54128.1
Mu-like prophage FluMu protein gp28; PFAM: Terminase-like family.
 
     0.754
APZ54136.1
PFAM: N-acetylmuramoyl-L-alanine amidase; Bacterial SH3 domain.
 
     0.730
APZ53146.1
Phage tail fiber protein.
  
     0.724
APZ53145.1
PFAM: NlpC/P60 family.
  
   
 0.719
APZ54122.1
PFAM: Mu-like prophage major head subunit gpT.
  
   
 0.710
APZ54124.1
PFAM: Mu-like prophage I protein.
  
   
 0.698
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
Server load: low (22%) [HD]