STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ54435.1Multiple antibiotic resistance protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family. (206 aa)    
Predicted Functional Partners:
APZ54434.1
PFAM: Aspartyl protease; TIGRFAM: clan AA aspartic protease, TIGR02281 family.
       0.749
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
     0.585
APZ53197.1
PFAM: Mechanosensitive ion channel.
  
    0.570
APZ54467.1
PFAM: Mechanosensitive ion channel; predicted DUF3772 protein.
  
    0.570
APZ52724.1
PFAM: Cytochrome c; Di-haem cytochrome c peroxidase.
     0.538
APZ54436.1
ATP-binding cassette, subfamily F, member 3; PFAM: ABC transporter.
       0.535
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.