APZ54446.1 protein (Pelagibaca abyssi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APZ54446.1

Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain. (270 aa)

Predicted Functional Partners:

APZ54445.1

0.511

APZ54447.1

0.497

APZ53434.1

0.455

APZ53280.1

0.450

APZ52707.1

0.406

Your Current Organism:

Pelagibaca abyssi

NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ52707.1	APZ54446.1	Ga0080574_TMP2373	Ga0080574_TMP4112	Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	0.406
APZ53280.1	APZ54446.1	Ga0080574_TMP2946	Ga0080574_TMP4112	SH3 domain-containing protein; PFAM: Bacterial SH3 domain.	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	0.450
APZ53434.1	APZ54446.1	Ga0080574_TMP3100	Ga0080574_TMP4112	Transglycosylase family protein; PFAM: Transglycosylase SLT domain.	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	0.455
APZ54445.1	APZ54446.1	Ga0080574_TMP4111	Ga0080574_TMP4112	Hypothetical protein.	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	0.511
APZ54446.1	APZ52707.1	Ga0080574_TMP4112	Ga0080574_TMP2373	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.	0.406
APZ54446.1	APZ53280.1	Ga0080574_TMP4112	Ga0080574_TMP2946	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	SH3 domain-containing protein; PFAM: Bacterial SH3 domain.	0.450
APZ54446.1	APZ53434.1	Ga0080574_TMP4112	Ga0080574_TMP3100	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	Transglycosylase family protein; PFAM: Transglycosylase SLT domain.	0.455
APZ54446.1	APZ54445.1	Ga0080574_TMP4112	Ga0080574_TMP4111	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	Hypothetical protein.	0.511
APZ54446.1	APZ54447.1	Ga0080574_TMP4112	Ga0080574_TMP4113	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	Hypothetical protein.	0.497
APZ54447.1	APZ54446.1	Ga0080574_TMP4113	Ga0080574_TMP4112	Hypothetical protein.	Membrane-bound lytic murein transglycosylase B; PFAM: Transglycosylase SLT domain.	0.497