STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ54718.1PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (234 aa)    
Predicted Functional Partners:
APZ54720.1
PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS fold.
 
 
 0.952
APZ54719.1
Hypothetical protein; PFAM: FIST C domain; FIST N domain.
 
    0.919
APZ51969.1
PAS domain S-box-containing protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
 
 
 0.907
APZ53647.1
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
  
 
 
 0.678
APZ52718.1
PAS/PAC sensor hybrid histidine kinase; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; TIGRFAM: PAS domain S-box.
 
 
 0.648
APZ53648.1
Cytochrome c-550 PedF; PFAM: Cytochrome C oxidase, cbb3-type, subunit III; TIGRFAM: cytochrome c-550 PedF.
  
  
 0.631
APZ53651.1
Hypothetical protein.
  
     0.606
APZ51278.1
Hypothetical protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain.
 
 
 0.596
APZ52181.1
PAS domain S-box-containing protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
 
 
 0.584
APZ53645.1
Regulator of nitric oxide reductase transcription; PFAM: 4Fe-4S binding domain.
 
  
 0.582
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.