STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ54966.16-hydroxynicotinate reductase. (503 aa)    
Predicted Functional Partners:
APZ54967.1
Hypothetical protein.
 
     0.959
APZ54968.1
PFAM: Amino acid synthesis.
 
     0.959
APZ54969.1
PFAM: Amino acid synthesis.
 
     0.955
APZ54964.1
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; 2Fe-2S iron-sulfur cluster binding domain; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; [2Fe-2S] binding domain.
     0.906
APZ54965.1
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein; PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain.
 
    0.840
APZ54970.1
Amino acid/amide ABC transporter substrate-binding protein; PFAM: Periplasmic binding protein.
 
     0.767
APZ54975.1
Transcriptional regulator; PFAM: MarR family.
 
     0.706
APZ54971.1
Amino acid/amide ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.688
APZ54972.1
PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
    0.611
APZ54961.1
PFAM: Hydantoinase B/oxoprolinase.
 
     0.444
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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