STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ54997.1PFAM: PAP2 superfamily. (324 aa)    
Predicted Functional Partners:
APZ54999.1
TPR repeat protein.
 
    0.908
APZ54996.1
PFAM: Subtilase family.
 
 
 0.868
APZ54998.1
Hypothetical protein.
       0.773
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.726
APZ54994.1
Vanadium-dependent bromoperoxidase 2.
  
    0.711
APZ52776.1
PFAM: Subtilase family; Belongs to the peptidase S8 family.
 
 
 0.667
APZ53473.1
PFAM: Glycosyl transferase family 2.
 
   
 0.627
APZ54114.1
Flagellar motor rotation protein MotB.
  
     0.622
APZ53498.1
PFAM: GlcNAc-PI de-N-acetylase.
  
     0.596
APZ52509.1
PFAM: Acyl transferase domain; Polyketide synthase dehydratase; Ketoacyl-synthetase C-terminal extension; Beta-ketoacyl synthase, C-terminal domain; Phosphopantetheine attachment site; Thioesterase domain; KR domain; Beta-ketoacyl synthase, N-terminal domain.
  
  
 0.590
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.