STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
APZ55038.1Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: Alpha/beta hydrolase family. (246 aa)    
Predicted Functional Partners:
APZ52635.1
Hypothetical protein; PFAM: Tim44-like domain.
  
     0.751
APZ53872.1
NADH dehydrogenase; PFAM: ETC complex I subunit conserved region.
  
     0.707
APZ55037.1
Hypothetical protein; PFAM: Glyoxalase-like domain.
       0.672
APZ51852.1
Chaperone required for the assembly of F1-ATPase; PFAM: ATP12 chaperone protein.
  
     0.638
APZ52158.1
PFAM: COQ9; TIGRFAM: rpsU-divergently transcribed protein.
  
 
   0.573
APZ55039.1
PFAM: Transcriptional regulator; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family.
 
     0.547
APZ54155.1
Hypothetical protein.
    
  0.517
APZ55035.1
Putative hydrolase or acyltransferase of alpha/beta superfamily; PFAM: Alpha/beta hydrolase family.
       0.489
APZ55036.1
Putative ester cyclase; PFAM: SnoaL-like polyketide cyclase.
       0.465
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
  
    0.430
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.