STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ55163.1Type IV secretion system protein VirB10; PFAM: Bacterial conjugation TrbI-like protein. (373 aa)    
Predicted Functional Partners:
APZ55164.1
PFAM: Conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbG.
 
 0.996
APZ52275.1
PFAM: Conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbG.
 
 0.984
APZ55162.1
Uncharacterized conserved small protein; PFAM: predicted DUF2274 protein.
 
   
 0.945
APZ55169.1
Type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB family, component of type IV transporter system; AAA-like domain; TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.942
APZ55170.1
Conjugative transfer protein TrbE.
 
  
 0.920
APZ52280.1
Conjugative transfer protein TrbE.
 
  
 0.902
APZ52281.1
PFAM: CagE, TrbE, VirB family, component of type IV transporter system; AAA-like domain.
  
 0.902
APZ55165.1
Type IV secretion system protein VirB5; PFAM: VirB8 protein.
   
 0.891
APZ55166.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; TIGRFAM: P-type conjugative transfer protein TrbL.
 
   
 0.889
APZ55168.1
TIGRFAM: P-type conjugative transfer protein TrbJ.
 
   
 0.884
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.