STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ51069.1Methyltransferase domain-containing protein; PFAM: Methyltransferase domain; P-loop containing NTP hydrolase pore-1; C-terminal domain on Strawberry notch homologue. (1440 aa)    
Predicted Functional Partners:
APZ51068.1
Toprim domain-containing protein; PFAM: Toprim domain.
     0.942
APZ51067.1
PFAM: predicted DUF2493 protein.
 
     0.862
APZ52307.1
PFAM: predicted DUF2493 protein.
 
     0.777
APZ52308.1
Toprim domain-containing protein; PFAM: Toprim domain.
     0.756
APZ52315.1
ParB family protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB/RepB/Spo0J family partition protein.
 
     0.752
APZ51073.1
ParB family protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB/RepB/Spo0J family partition protein.
 
     0.751
APZ51076.1
PFAM: predicted DUF1738 protein.
     0.692
APZ52318.1
PFAM: predicted DUF1738 protein.
     0.622
APZ53088.1
Hypothetical protein.
 
  
 0.488
rsmI
16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.445
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.